Check version of R:
sessionInfo()R version 4.2.2 (2022-10-31)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.6
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.2 fastmap_1.1.0 cli_3.6.0 htmltools_0.5.4 tools_4.2.2
[6] yaml_2.3.7 rmarkdown_2.20 knitr_1.42 xfun_0.36 digest_0.6.31
[11] rlang_1.0.6 evaluate_0.20 Removing any current installation of RStan
remove.packages("rstan")Removing package from ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
(as ‘lib’ is unspecified)Error in remove.packages : there is no package called ‘rstan’if (file.exists(".RData")) file.remove(".RData")# Sys.setenv(DOWNLOAD_STATIC_LIBV8 = 1) # only necessary for Linux without the nodejs library / headers
install.packages("rstan", repos = "https://cloud.r-project.org/", dependencies = TRUE)also installing the dependencies ‘colorspace’, ‘utf8’, ‘lazyeval’, ‘numDeriv’, ‘farver’, ‘labeling’, ‘munsell’, ‘RColorBrewer’, ‘viridisLite’, ‘fansi’, ‘pillar’, ‘pkgconfig’, ‘backports’, ‘ps’, ‘httpuv’, ‘fontawesome’, ‘sourcetools’, ‘later’, ‘promises’, ‘htmlwidgets’, ‘miniUI’, ‘crosstalk’, ‘zoo’, ‘plyr’, ‘igraph’, ‘generics’, ‘abind’, ‘tensorA’, ‘distributional’, ‘gtable’, ‘isoband’, ‘scales’, ‘tibble’, ‘withr’, ‘checkmate’, ‘matrixStats’, ‘callr’, ‘crayon’, ‘desc’, ‘prettyunits’, ‘processx’, ‘rprojroot’, ‘shiny’, ‘colourpicker’, ‘DT’, ‘dygraphs’, ‘gtools’, ‘reshape2’, ‘shinyjs’, ‘shinythemes’, ‘threejs’, ‘xtable’, ‘xts’, ‘dplyr’, ‘ggridges’, ‘posterior’, ‘tidyselect’, ‘curl’, ‘StanHeaders’, ‘ggplot2’, ‘inline’, ‘gridExtra’, ‘Rcpp’, ‘RcppParallel’, ‘loo’, ‘pkgbuild’, ‘RcppEigen’, ‘BH’, ‘RUnit’, ‘shinystan’, ‘bayesplot’, ‘rstantools’, ‘rstudioapi’, ‘V8’
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* installing *source* package ‘fontawesome’ ...
** package ‘fontawesome’ successfully unpacked and MD5 sums checked
** using staged installation
** R
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** help
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* DONE (fontawesome)
The downloaded source packages are in
‘/private/var/folders/98/_dskclzx4ysgs770t3f24qbw0000gn/T/RtmpuCNshy/downloaded_packages’Next I will check the installation to make sure its good. It turns out to be fine.
#library('rstan')
example(stan_model, package = "rstan", run.dontrun = TRUE)Loading required package: StanHeaders
Loading required package: ggplot2
RStudio Community is a great place to get help:
https://community.rstudio.com/c/tidyverse
rstan (Version 2.21.8, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
stn_md> stancode <- 'data {real y_mean;} parameters {real y;} model {y ~ normal(y_mean,1);}'
stn_md> mod <- stan_model(model_code = stancode, verbose = TRUE)
TRANSLATING MODEL '16a540c6086086816528e4524def24d9' FROM Stan CODE TO C++ CODE NOW.
successful in parsing the Stan model '16a540c6086086816528e4524def24d9'.
COMPILING THE C++ CODE FOR MODEL '16a540c6086086816528e4524def24d9' NOW.
OS: x86_64, darwin17.0; rstan: 2.21.8; Rcpp: 1.0.10; inline: 0.3.19
>> setting environment variables:
PKG_LIBS = '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rstan/lib//libStanServices.a' -L'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/lib/' -lStanHeaders -L'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppParallel/lib/' -ltbb
PKG_CPPFLAGS = -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppEigen/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppEigen/include/unsupported" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/include/src/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppParallel/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DBOOST_NO_AUTO_PTR -include '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1
>> Program source :
1 :
2 : // includes from the plugin
3 : // [[Rcpp::plugins(cpp14)]]
4 :
5 :
6 : // user includes
7 : #include <Rcpp.h>
8 : #include <rstan/io/rlist_ref_var_context.hpp>
9 : #include <rstan/io/r_ostream.hpp>
10 : #include <rstan/stan_args.hpp>
11 : #include <boost/integer/integer_log2.hpp>
12 : // Code generated by Stan version 2.21.0
13 :
14 : #include <stan/model/model_header.hpp>
15 :
16 : namespace model26af63845289_16a540c6086086816528e4524def24d9_namespace {
17 :
18 : using std::istream;
19 : using std::string;
20 : using std::stringstream;
21 : using std::vector;
22 : using stan::io::dump;
23 : using stan::math::lgamma;
24 : using stan::model::prob_grad;
25 : using namespace stan::math;
26 :
27 : static int current_statement_begin__;
28 :
29 : stan::io::program_reader prog_reader__() {
30 : stan::io::program_reader reader;
31 : reader.add_event(0, 0, "start", "model26af63845289_16a540c6086086816528e4524def24d9");
32 : reader.add_event(3, 1, "end", "model26af63845289_16a540c6086086816528e4524def24d9");
33 : return reader;
34 : }
35 :
36 : class model26af63845289_16a540c6086086816528e4524def24d9
37 : : public stan::model::model_base_crtp<model26af63845289_16a540c6086086816528e4524def24d9> {
38 : private:
39 : double y_mean;
40 : public:
41 : model26af63845289_16a540c6086086816528e4524def24d9(rstan::io::rlist_ref_var_context& context__,
42 : std::ostream* pstream__ = 0)
43 : : model_base_crtp(0) {
44 : ctor_body(context__, 0, pstream__);
45 : }
46 :
47 : model26af63845289_16a540c6086086816528e4524def24d9(stan::io::var_context& context__,
48 : unsigned int random_seed__,
49 : std::ostream* pstream__ = 0)
50 : : model_base_crtp(0) {
51 : ctor_body(context__, random_seed__, pstream__);
52 : }
53 :
54 : void ctor_body(stan::io::var_context& context__,
55 : unsigned int random_seed__,
56 : std::ostream* pstream__) {
57 : typedef double local_scalar_t__;
58 :
59 : boost::ecuyer1988 base_rng__ =
60 : stan::services::util::create_rng(random_seed__, 0);
61 : (void) base_rng__; // suppress unused var warning
62 :
63 : current_statement_begin__ = -1;
64 :
65 : static const char* function__ = "model26af63845289_16a540c6086086816528e4524def24d9_namespace::model26af63845289_16a540c6086086816528e4524def24d9";
66 : (void) function__; // dummy to suppress unused var warning
67 : size_t pos__;
68 : (void) pos__; // dummy to suppress unused var warning
69 : std::vector<int> vals_i__;
70 : std::vector<double> vals_r__;
71 : local_scalar_t__ DUMMY_VAR__(std::numeric_limits<double>::quiet_NaN());
72 : (void) DUMMY_VAR__; // suppress unused var warning
73 :
74 : try {
75 : // initialize data block variables from context__
76 : current_statement_begin__ = 1;
77 : context__.validate_dims("data initialization", "y_mean", "double", context__.to_vec());
78 : y_mean = double(0);
79 : vals_r__ = context__.vals_r("y_mean");
80 : pos__ = 0;
81 : y_mean = vals_r__[pos__++];
82 :
83 :
84 : // initialize transformed data variables
85 : // execute transformed data statements
86 :
87 : // validate transformed data
88 :
89 : // validate, set parameter ranges
90 : num_params_r__ = 0U;
91 : param_ranges_i__.clear();
92 : current_statement_begin__ = 1;
93 : num_params_r__ += 1;
94 : } catch (const std::exception& e) {
95 : stan::lang::rethrow_located(e, current_statement_begin__, prog_reader__());
96 : // Next line prevents compiler griping about no return
97 : throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
98 : }
99 : }
100 :
101 : ~model26af63845289_16a540c6086086816528e4524def24d9() { }
102 :
103 :
104 : void transform_inits(const stan::io::var_context& context__,
105 : std::vector<int>& params_i__,
106 : std::vector<double>& params_r__,
107 : std::ostream* pstream__) const {
108 : typedef double local_scalar_t__;
109 : stan::io::writer<double> writer__(params_r__, params_i__);
110 : size_t pos__;
111 : (void) pos__; // dummy call to supress warning
112 : std::vector<double> vals_r__;
113 : std::vector<int> vals_i__;
114 :
115 : current_statement_begin__ = 1;
116 : if (!(context__.contains_r("y")))
117 : stan::lang::rethrow_located(std::runtime_error(std::string("Variable y missing")), current_statement_begin__, prog_reader__());
118 : vals_r__ = context__.vals_r("y");
119 : pos__ = 0U;
120 : context__.validate_dims("parameter initialization", "y", "double", context__.to_vec());
121 : double y(0);
122 : y = vals_r__[pos__++];
123 : try {
124 : writer__.scalar_unconstrain(y);
125 : } catch (const std::exception& e) {
126 : stan::lang::rethrow_located(std::runtime_error(std::string("Error transforming variable y: ") + e.what()), current_statement_begin__, prog_reader__());
127 : }
128 :
129 : params_r__ = writer__.data_r();
130 : params_i__ = writer__.data_i();
131 : }
132 :
133 : void transform_inits(const stan::io::var_context& context,
134 : Eigen::Matrix<double, Eigen::Dynamic, 1>& params_r,
135 : std::ostream* pstream__) const {
136 : std::vector<double> params_r_vec;
137 : std::vector<int> params_i_vec;
138 : transform_inits(context, params_i_vec, params_r_vec, pstream__);
139 : params_r.resize(params_r_vec.size());
140 : for (int i = 0; i < params_r.size(); ++i)
141 : params_r(i) = params_r_vec[i];
142 : }
143 :
144 :
145 : template <bool propto__, bool jacobian__, typename T__>
146 : T__ log_prob(std::vector<T__>& params_r__,
147 : std::vector<int>& params_i__,
148 : std::ostream* pstream__ = 0) const {
149 :
150 : typedef T__ local_scalar_t__;
151 :
152 : local_scalar_t__ DUMMY_VAR__(std::numeric_limits<double>::quiet_NaN());
153 : (void) DUMMY_VAR__; // dummy to suppress unused var warning
154 :
155 : T__ lp__(0.0);
156 : stan::math::accumulator<T__> lp_accum__;
157 : try {
158 : stan::io::reader<local_scalar_t__> in__(params_r__, params_i__);
159 :
160 : // model parameters
161 : current_statement_begin__ = 1;
162 : local_scalar_t__ y;
163 : (void) y; // dummy to suppress unused var warning
164 : if (jacobian__)
165 : y = in__.scalar_constrain(lp__);
166 : else
167 : y = in__.scalar_constrain();
168 :
169 : // model body
170 :
171 : current_statement_begin__ = 1;
172 : lp_accum__.add(normal_log<propto__>(y, y_mean, 1));
173 :
174 : } catch (const std::exception& e) {
175 : stan::lang::rethrow_located(e, current_statement_begin__, prog_reader__());
176 : // Next line prevents compiler griping about no return
177 : throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
178 : }
179 :
180 : lp_accum__.add(lp__);
181 : return lp_accum__.sum();
182 :
183 : } // log_prob()
184 :
185 : template <bool propto, bool jacobian, typename T_>
186 : T_ log_prob(Eigen::Matrix<T_,Eigen::Dynamic,1>& params_r,
187 : std::ostream* pstream = 0) const {
188 : std::vector<T_> vec_params_r;
189 : vec_params_r.reserve(params_r.size());
190 : for (int i = 0; i < params_r.size(); ++i)
191 : vec_params_r.push_back(params_r(i));
192 : std::vector<int> vec_params_i;
193 : return log_prob<propto,jacobian,T_>(vec_params_r, vec_params_i, pstream);
194 : }
195 :
196 :
197 : void get_param_names(std::vector<std::string>& names__) const {
198 : names__.resize(0);
199 : names__.push_back("y");
200 : }
201 :
202 :
203 : void get_dims(std::vector<std::vector<size_t> >& dimss__) const {
204 : dimss__.resize(0);
205 : std::vector<size_t> dims__;
206 : dims__.resize(0);
207 : dimss__.push_back(dims__);
208 : }
209 :
210 : template <typename RNG>
211 : void write_array(RNG& base_rng__,
212 : std::vector<double>& params_r__,
213 : std::vector<int>& params_i__,
214 : std::vector<double>& vars__,
215 : bool include_tparams__ = true,
216 : bool include_gqs__ = true,
217 : std::ostream* pstream__ = 0) const {
218 : typedef double local_scalar_t__;
219 :
220 : vars__.resize(0);
221 : stan::io::reader<local_scalar_t__> in__(params_r__, params_i__);
222 : static const char* function__ = "model26af63845289_16a540c6086086816528e4524def24d9_namespace::write_array";
223 : (void) function__; // dummy to suppress unused var warning
224 :
225 : // read-transform, write parameters
226 : double y = in__.scalar_constrain();
227 : vars__.push_back(y);
228 :
229 : double lp__ = 0.0;
230 : (void) lp__; // dummy to suppress unused var warning
231 : stan::math::accumulator<double> lp_accum__;
232 :
233 : local_scalar_t__ DUMMY_VAR__(std::numeric_limits<double>::quiet_NaN());
234 : (void) DUMMY_VAR__; // suppress unused var warning
235 :
236 : if (!include_tparams__ && !include_gqs__) return;
237 :
238 : try {
239 : if (!include_gqs__ && !include_tparams__) return;
240 : if (!include_gqs__) return;
241 : } catch (const std::exception& e) {
242 : stan::lang::rethrow_located(e, current_statement_begin__, prog_reader__());
243 : // Next line prevents compiler griping about no return
244 : throw std::runtime_error("*** IF YOU SEE THIS, PLEASE REPORT A BUG ***");
245 : }
246 : }
247 :
248 : template <typename RNG>
249 : void write_array(RNG& base_rng,
250 : Eigen::Matrix<double,Eigen::Dynamic,1>& params_r,
251 : Eigen::Matrix<double,Eigen::Dynamic,1>& vars,
252 : bool include_tparams = true,
253 : bool include_gqs = true,
254 : std::ostream* pstream = 0) const {
255 : std::vector<double> params_r_vec(params_r.size());
256 : for (int i = 0; i < params_r.size(); ++i)
257 : params_r_vec[i] = params_r(i);
258 : std::vector<double> vars_vec;
259 : std::vector<int> params_i_vec;
260 : write_array(base_rng, params_r_vec, params_i_vec, vars_vec, include_tparams, include_gqs, pstream);
261 : vars.resize(vars_vec.size());
262 : for (int i = 0; i < vars.size(); ++i)
263 : vars(i) = vars_vec[i];
264 : }
265 :
266 : std::string model_name() const {
267 : return "model26af63845289_16a540c6086086816528e4524def24d9";
268 : }
269 :
270 :
271 : void constrained_param_names(std::vector<std::string>& param_names__,
272 : bool include_tparams__ = true,
273 : bool include_gqs__ = true) const {
274 : std::stringstream param_name_stream__;
275 : param_name_stream__.str(std::string());
276 : param_name_stream__ << "y";
277 : param_names__.push_back(param_name_stream__.str());
278 :
279 : if (!include_gqs__ && !include_tparams__) return;
280 :
281 : if (include_tparams__) {
282 : }
283 :
284 : if (!include_gqs__) return;
285 : }
286 :
287 :
288 : void unconstrained_param_names(std::vector<std::string>& param_names__,
289 : bool include_tparams__ = true,
290 : bool include_gqs__ = true) const {
291 : std::stringstream param_name_stream__;
292 : param_name_stream__.str(std::string());
293 : param_name_stream__ << "y";
294 : param_names__.push_back(param_name_stream__.str());
295 :
296 : if (!include_gqs__ && !include_tparams__) return;
297 :
298 : if (include_tparams__) {
299 : }
300 :
301 : if (!include_gqs__) return;
302 : }
303 :
304 : }; // model
305 :
306 : } // namespace
307 :
308 : typedef model26af63845289_16a540c6086086816528e4524def24d9_namespace::model26af63845289_16a540c6086086816528e4524def24d9 stan_model;
309 :
310 : #ifndef USING_R
311 :
312 : stan::model::model_base& new_model(
313 : stan::io::var_context& data_context,
314 : unsigned int seed,
315 : std::ostream* msg_stream) {
316 : stan_model* m = new stan_model(data_context, seed, msg_stream);
317 : return *m;
318 : }
319 :
320 : #endif
321 :
322 :
323 :
324 : #include <rstan_next/stan_fit.hpp>
325 :
326 : struct stan_model_holder {
327 : stan_model_holder(rstan::io::rlist_ref_var_context rcontext,
328 : unsigned int random_seed)
329 : : rcontext_(rcontext), random_seed_(random_seed)
330 : {
331 : }
332 :
333 : //stan::math::ChainableStack ad_stack;
334 : rstan::io::rlist_ref_var_context rcontext_;
335 : unsigned int random_seed_;
336 : };
337 :
338 : Rcpp::XPtr<stan::model::model_base> model_ptr(stan_model_holder* smh) {
339 : Rcpp::XPtr<stan::model::model_base> model_instance(new stan_model(smh->rcontext_, smh->random_seed_), true);
340 : return model_instance;
341 : }
342 :
343 : Rcpp::XPtr<rstan::stan_fit_base> fit_ptr(stan_model_holder* smh) {
344 : return Rcpp::XPtr<rstan::stan_fit_base>(new rstan::stan_fit(model_ptr(smh), smh->random_seed_), true);
345 : }
346 :
347 : std::string model_name(stan_model_holder* smh) {
348 : return model_ptr(smh).get()->model_name();
349 : }
350 :
351 : RCPP_MODULE(stan_fit4model26af63845289_16a540c6086086816528e4524def24d9_mod){
352 : Rcpp::class_<stan_model_holder>("stan_fit4model26af63845289_16a540c6086086816528e4524def24d9")
353 : .constructor<rstan::io::rlist_ref_var_context, unsigned int>()
354 : .method("model_ptr", &model_ptr)
355 : .method("fit_ptr", &fit_ptr)
356 : .method("model_name", &model_name)
357 : ;
358 : }
359 :
360 :
361 : // declarations
362 : extern "C" {
363 : SEXP file26af6ea96b62( ) ;
364 : }
365 :
366 : // definition
367 : SEXP file26af6ea96b62() {
368 : return Rcpp::wrap("16a540c6086086816528e4524def24d9");
369 : }
make cmd is
make -f '/Library/Frameworks/R.framework/Resources/etc/Makeconf' -f '/Library/Frameworks/R.framework/Resources/share/make/shlib.mk' CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB='file26af6ea96b62.so' OBJECTS='file26af6ea96b62.o'
make would use
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppEigen/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppEigen/include/unsupported" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/include/src/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppParallel/include/" -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DBOOST_NO_AUTO_PTR -include '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/usr/local/include -fPIC -Wall -g -O2 -c file26af6ea96b62.cpp -o file26af6ea96b62.o
if test "zfile26af6ea96b62.o" != "z"; then \
echo clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"/Library/Frameworks/R.framework/Resources/lib" -L/usr/local/lib -o file26af6ea96b62.so file26af6ea96b62.o '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rstan/lib//libStanServices.a' -L'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/lib/' -lStanHeaders -L'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppParallel/lib/' -ltbb -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"/Library/Frameworks/R.framework/Resources/lib" -L/usr/local/lib -o file26af6ea96b62.so file26af6ea96b62.o '/Library/Frameworks/R.framework/Versions/4.2/Resources/library/rstan/lib//libStanServices.a' -L'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/StanHeaders/lib/' -lStanHeaders -L'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppParallel/lib/' -ltbb -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
fi
stn_md> fit <- sampling(mod, data = list(y_mean = 0))
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.020146 seconds (Warm-up)
Chain 1: 0.020211 seconds (Sampling)
Chain 1: 0.040357 seconds (Total)
Chain 1:
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 9e-06 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.021086 seconds (Warm-up)
Chain 2: 0.017621 seconds (Sampling)
Chain 2: 0.038707 seconds (Total)
Chain 2:
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 9e-06 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 3: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 3:
Chain 3: Elapsed Time: 0.023116 seconds (Warm-up)
Chain 3: 0.018033 seconds (Sampling)
Chain 3: 0.041149 seconds (Total)
Chain 3:
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 8e-06 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.08 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling)
Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling)
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Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 0.022877 seconds (Warm-up)
Chain 4: 0.019182 seconds (Sampling)
Chain 4: 0.042059 seconds (Total)
Chain 4:
stn_md> fit2 <- sampling(mod, data = list(y_mean = 5))
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9e-06 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup)
Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup)
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Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling)
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Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.018732 seconds (Warm-up)
Chain 1: 0.016824 seconds (Sampling)
Chain 1: 0.035556 seconds (Total)
Chain 1:
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 8e-06 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.08 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 2: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.021559 seconds (Warm-up)
Chain 2: 0.01866 seconds (Sampling)
Chain 2: 0.040219 seconds (Total)
Chain 2:
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 3).
Chain 3:
Chain 3: Gradient evaluation took 7e-06 seconds
Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.07 seconds.
Chain 3: Adjust your expectations accordingly!
Chain 3:
Chain 3:
Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup)
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Chain 3:
Chain 3: Elapsed Time: 0.021424 seconds (Warm-up)
Chain 3: 0.018246 seconds (Sampling)
Chain 3: 0.03967 seconds (Total)
Chain 3:
SAMPLING FOR MODEL '16a540c6086086816528e4524def24d9' NOW (CHAIN 4).
Chain 4:
Chain 4: Gradient evaluation took 1.1e-05 seconds
Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
Chain 4: Adjust your expectations accordingly!
Chain 4:
Chain 4:
Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup)
Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup)
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Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling)
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Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling)
Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling)
Chain 4: Iteration: 2000 / 2000 [100%] (Sampling)
Chain 4:
Chain 4: Elapsed Time: 0.017683 seconds (Warm-up)
Chain 4: 0.019799 seconds (Sampling)
Chain 4: 0.037482 seconds (Total)
Chain 4: # we recommend running this is a fresh R session or restarting your current session
install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))also installing the dependency ‘data.table’
trying URL 'https://cran.rstudio.com/bin/macosx/contrib/4.2/data.table_1.14.6.tgz'
Content type 'application/x-gzip' length 2329531 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
trying URL 'https://mc-stan.org/r-packages/bin/macosx/contrib/4.2/cmdstanr_0.5.3.tgz'
Content type 'application/octet-stream' length 1124035 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
The downloaded binary packages are in
/var/folders/98/_dskclzx4ysgs770t3f24qbw0000gn/T//Rtmpi3512p/downloaded_packagesChecking the installation.
library(cmdstanr)This is cmdstanr version 0.5.3
- CmdStanR documentation and vignettes: mc-stan.org/cmdstanr
- CmdStan path: /Users/brianbeckage/.cmdstan/cmdstan-2.28.2
- CmdStan version: 2.28.2
A newer version of CmdStan is available. See ?install_cmdstan() to install it.
To disable this check set option or environment variable CMDSTANR_NO_VER_CHECK=TRUE.check_cmdstan_toolchain(fix = TRUE, quiet = TRUE)
library(posterior)This is posterior version 1.3.1
Attaching package: ‘posterior’
The following objects are masked from ‘package:stats’:
mad, sd, varlibrary(bayesplot)This is bayesplot version 1.10.0
- Online documentation and vignettes at mc-stan.org/bayesplot
- bayesplot theme set to bayesplot::theme_default()
* Does _not_ affect other ggplot2 plots
* See ?bayesplot_theme_set for details on theme setting
Attaching package: ‘bayesplot’
The following object is masked from ‘package:posterior’:
rhatcolor_scheme_set("brightblue")Message above indicated that I need to update my installation of CmdStan: ‘A newer version of CmdStan is available. See ?install_cmdstan() to install it.’
First checkibg to see if C tools are properly set up
check_cmdstan_toolchain()The C++ toolchain required for CmdStan is setup properly!Next, installing CmdStan
install_cmdstan(cores = 2)The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.31.0
* Installing CmdStan v2.31.0 in /Users/brianbeckage/.cmdstan/cmdstan-2.31.0
* Downloading cmdstan-2.31.0.tar.gz from GitHub...
* Download complete
* Unpacking archive...
* Building CmdStan binaries...cp bin/mac-stanc bin/stanc
chmod +x bin/stanc
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o
touch stan/lib/stan_math/lib/tbb/tbb-make-check
--- Compiling the main object file. This might take up to a minute. ---
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -o src/cmdstan/main.o src/cmdstan/main.cpp
--- Compiling pre-compiled header. This might take a few seconds. ---
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c stan/src/stan/model/model_header.hpp -o stan/src/stan/model/model_header.hpp.gch
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:4:
In file included from src/cmdstan/arguments/arg_data.hpp:4:
In file included from src/cmdstan/arguments/categorical_argument.hpp:4:
In file included from src/cmdstan/arguments/argument.hpp:4:
In file included from stan/src/stan/callbacks/writer.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:31:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/bad_lexical_cast.hpp:28:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:75:14: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( line() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:4:
In file included from src/cmdstan/arguments/arg_data.hpp:4:
In file included from src/cmdstan/arguments/categorical_argument.hpp:4:
In file included from src/cmdstan/arguments/argument.hpp:4:
In file included from stan/src/stan/callbacks/writer.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:31:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/bad_lexical_cast.hpp:28:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:80:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( column() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:4:
In file included from src/cmdstan/arguments/arg_data.hpp:4:
In file included from src/cmdstan/arguments/categorical_argument.hpp:4:
In file included from src/cmdstan/arguments/argument.hpp:4:
In file included from stan/src/stan/callbacks/writer.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:4:
In file included from src/cmdstan/arguments/arg_data.hpp:4:
In file included from src/cmdstan/arguments/categorical_argument.hpp:4:
In file included from src/cmdstan/arguments/argument.hpp:4:
In file included from stan/src/stan/callbacks/writer.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:4:
In file included from src/cmdstan/arguments/arg_data.hpp:4:
In file included from src/cmdstan/arguments/categorical_argument.hpp:4:
In file included from src/cmdstan/arguments/argument.hpp:4:
In file included from stan/src/stan/callbacks/writer.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:8:
In file included from stan/lib/stan_math/stan/math/rev/core.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/core/chainable_object.hpp:6:
In file included from stan/lib/stan_math/stan/math/rev/core/typedefs.hpp:7:
In file included from stan/lib/stan_math/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:31:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/bad_lexical_cast.hpp:28:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:75:14: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( line() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:8:
In file included from stan/lib/stan_math/stan/math/rev/core.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/core/chainable_object.hpp:6:
In file included from stan/lib/stan_math/stan/math/rev/core/typedefs.hpp:7:
In file included from stan/lib/stan_math/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:31:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/bad_lexical_cast.hpp:28:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:80:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( column() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:8:
In file included from stan/lib/stan_math/stan/math/rev/core.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/core/chainable_object.hpp:6:
In file included from stan/lib/stan_math/stan/math/rev/core/typedefs.hpp:7:
In file included from stan/lib/stan_math/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:8:
In file included from stan/lib/stan_math/stan/math/rev/core.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/core/chainable_object.hpp:6:
In file included from stan/lib/stan_math/stan/math/rev/core/typedefs.hpp:7:
In file included from stan/lib/stan_math/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:8:
In file included from stan/lib/stan_math/stan/math/rev/core.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/core/chainable_object.hpp:6:
In file included from stan/lib/stan_math/stan/math/rev/core/typedefs.hpp:7:
In file included from stan/lib/stan_math/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:29:
In file included from stan/src/stan/io/dump.hpp:7:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:72:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d).", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/main.cpp:1:
In file included from src/cmdstan/command.hpp:29:
In file included from stan/src/stan/io/dump.hpp:7:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:104:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d). A new step size was not found.", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/fun.hpp:198:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:72:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d).", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from stan/src/stan/model/model_header.hpp:4:
In file included from stan/lib/stan_math/stan/math.hpp:19:
In file included from stan/lib/stan_math/stan/math/rev.hpp:10:
In file included from stan/lib/stan_math/stan/math/rev/fun.hpp:198:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:104:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d). A new step size was not found.", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
7 warnings generated.
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -fvisibility=hidden -o bin/cmdstan/stansummary.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" src/cmdstan/stansummary.cpp
clang: warning: -Wl,-L,/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -Wl,-rpath,/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb: 'linker' input unused [-Wunused-command-line-argument]
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:23:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/split.hpp:16:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/iter_find.hpp:27:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/find_iterator.hpp:24:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function.hpp:30:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function/detail/prologue.hpp:15:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:75:14: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( line() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:23:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/split.hpp:16:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/iter_find.hpp:27:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/find_iterator.hpp:24:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function.hpp:30:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function/detail/prologue.hpp:15:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:80:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( column() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:72:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d).", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/stansummary.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:104:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d). A new step size was not found.", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
7 warnings generated.
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -fvisibility=hidden -o bin/cmdstan/print.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" src/cmdstan/print.cpp
clang: warning: -Wl,-L,/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -Wl,-rpath,/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb: 'linker' input unused [-Wunused-command-line-argument]
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:23:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/split.hpp:16:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/iter_find.hpp:27:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/find_iterator.hpp:24:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function.hpp:30:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function/detail/prologue.hpp:15:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:75:14: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( line() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:23:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/split.hpp:16:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/iter_find.hpp:27:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/find_iterator.hpp:24:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function.hpp:30:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function/detail/prologue.hpp:15:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:80:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( column() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
7 warnings generated.
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -fvisibility=hidden -o bin/cmdstan/diagnose.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" src/cmdstan/diagnose.cpp
clang: warning: -Wl,-L,/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb: 'linker' input unused [-Wunused-command-line-argument]
clang: warning: -Wl,-rpath,/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb: 'linker' input unused [-Wunused-command-line-argument]
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:23:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/split.hpp:16:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/iter_find.hpp:27:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/find_iterator.hpp:24:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function.hpp:30:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function/detail/prologue.hpp:15:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:75:14: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( line() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:4:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string.hpp:23:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/split.hpp:16:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/iter_find.hpp:27:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/find_iterator.hpp:24:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function.hpp:30:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/function/detail/prologue.hpp:15:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/throw_exception.hpp:24:
stan/lib/stan_math/lib/boost_1.78.0/boost/assert/source_location.hpp:80:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf( buffer, ":%ld", static_cast<long>( column() ) );
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:10:
In file included from stan/lib/stan_math/stan/math/prim/core.hpp:4:
In file included from stan/lib/stan_math/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast.hpp:32:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical.hpp:54:
stan/lib/stan_math/lib/boost_1.78.0/boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(begin,
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:72:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d).", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/print.cpp:2:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:104:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d). A new step size was not found.", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:72:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d).", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from src/cmdstan/diagnose.cpp:1:
In file included from src/cmdstan/stansummary_helper.hpp:4:
In file included from stan/src/stan/mcmc/chains.hpp:4:
In file included from stan/src/stan/io/stan_csv_reader.hpp:5:
In file included from stan/lib/stan_math/stan/math/prim.hpp:15:
In file included from stan/lib/stan_math/stan/math/prim/functor.hpp:14:
In file included from stan/lib/stan_math/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from stan/lib/stan_math/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint.hpp:37:
In file included from stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/stepper/dense_output_runge_kutta.hpp:40:
stan/lib/stan_math/lib/boost_1.78.0/boost/numeric/odeint/integrate/max_step_checker.hpp:104:18: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
std::sprintf(error_msg, "Max number of iterations exceeded (%d). A new step size was not found.", m_max_steps);
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
7 warnings generated.
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o
7 warnings generated.
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating archive stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating archive stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating archive stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a
tbb_root="../tbb_2020.3" CXX="clang++" CC="clang" LDFLAGS='-Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" ' 'make' -C "stan/lib/stan_math/lib/tbb" -r -f "/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbbmalloc" compiler=clang cfg=release stdver=c++1y malloc CXXFLAGS="-Wno-unknown-warning-option -Wno-deprecated-copy "
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/backend.cpp
ar: creating archive stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/large_objects.cpp
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" bin/cmdstan/stansummary.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -o bin/stansummary
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/backref.cpp
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" bin/cmdstan/print.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -o bin/print
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" bin/cmdstan/diagnose.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -o bin/diagnose
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/tbbmalloc.cpp
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -o itt_notify_malloc.o -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/itt_notify.cpp
sh ../tbb_2020.3/build/version_info_macos.sh clang++ -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wall -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include >version_string.ver
clang++ -E -x c++ ../tbb_2020.3/src/tbbmalloc/mac64-tbbmalloc-export.def -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wall -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include > tbbmalloc.def
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wall -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -D__TBBMALLOC_BUILD=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/proxy.cpp
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wall -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -D__TBBMALLOC_BUILD=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc ../tbb_2020.3/src/tbbmalloc/tbb_function_replacement.cpp
clang++ -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-non-virtual-dtor -Wno-dangling-else -fPIC -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I../tbb_2020.3/src/tbbmalloc -I../tbb_2020.3/src/tbbmalloc -I. ../tbb_2020.3/src/tbbmalloc/frontend.cpp
clang -fPIC -o libtbbmalloc.dylib backend.o large_objects.o backref.o tbbmalloc.o itt_notify_malloc.o frontend.o -ldl -lpthread -dynamiclib -install_name @rpath/libtbbmalloc.dylib -stdlib=libc++ -m64 -mmacosx-version-min=10.11 -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-exported_symbols_list,tbbmalloc.def
clang++ -fPIC -o libtbbmalloc_proxy.dylib proxy.o tbb_function_replacement.o -ldl -lpthread libtbbmalloc.dylib -dynamiclib -install_name @rpath/libtbbmalloc_proxy.dylib -stdlib=libc++ -m64 -mmacosx-version-min=10.11 -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb"
touch stan/lib/stan_math/lib/tbb/version_tbb_2020.3
tbb_root="../tbb_2020.3" CXX="clang++" CC="clang" LDFLAGS='-Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" ' 'make' -C "stan/lib/stan_math/lib/tbb" -r -f "/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbb" compiler=clang cfg=release stdver=c++1y CXXFLAGS="-Wno-unknown-warning-option -Wno-deprecated-copy "
/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbb:28: CONFIG: cfg=release arch=intel64 compiler=clang target=macos runtime=cc14.0.0_os12.6
clang++ -o concurrent_hash_map.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/concurrent_hash_map.cpp
clang++ -o concurrent_queue.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/concurrent_queue.cpp
clang++ -o concurrent_vector.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/concurrent_vector.cpp
clang++ -o dynamic_link.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/dynamic_link.cpp
clang++ -o itt_notify.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/itt_notify.cpp
clang++ -o cache_aligned_allocator.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/cache_aligned_allocator.cpp
clang++ -o pipeline.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/pipeline.cpp
clang++ -o queuing_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/queuing_mutex.cpp
clang++ -o queuing_rw_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/queuing_rw_mutex.cpp
clang++ -o reader_writer_lock.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/reader_writer_lock.cpp
clang++ -o spin_rw_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/spin_rw_mutex.cpp
clang++ -o x86_rtm_rw_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/x86_rtm_rw_mutex.cpp
clang++ -o spin_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/spin_mutex.cpp
clang++ -o critical_section.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/critical_section.cpp
clang++ -o mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/mutex.cpp
clang++ -o recursive_mutex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/recursive_mutex.cpp
clang++ -o condition_variable.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/condition_variable.cpp
clang++ -o tbb_thread.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_thread.cpp
clang++ -o concurrent_monitor.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/concurrent_monitor.cpp
clang++ -o semaphore.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/semaphore.cpp
clang++ -o private_server.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/private_server.cpp
clang++ -o rml_tbb.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/rml/client/rml_tbb.cpp
clang++ -o tbb_misc.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include -I. ../tbb_2020.3/src/tbb/tbb_misc.cpp
clang++ -o tbb_misc_ex.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_misc_ex.cpp
clang++ -o task.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/task.cpp
clang++ -o task_group_context.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/task_group_context.cpp
clang++ -o governor.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/governor.cpp
clang++ -o market.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/market.cpp
clang++ -o arena.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/arena.cpp
clang++ -o scheduler.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/scheduler.cpp
../tbb_2020.3/src/tbb/arena.cpp:308:14: warning: variable 'drained' set but not used [-Wunused-but-set-variable]
intptr_t drained = 0;
^
1 warning generated.
clang++ -o observer_proxy.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/observer_proxy.cpp
clang++ -o tbb_statistics.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_statistics.cpp
clang++ -o tbb_main.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/tbb/tbb_main.cpp
clang++ -o concurrent_vector_v2.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/concurrent_vector_v2.cpp
clang++ -o concurrent_queue_v2.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/concurrent_queue_v2.cpp
clang++ -o spin_rw_mutex_v2.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/spin_rw_mutex_v2.cpp
clang++ -o task_v2.o -c -MMD -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include ../tbb_2020.3/src/old/task_v2.cpp
sh ../tbb_2020.3/build/generate_tbbvars.sh DY
clang++ -E -x c++ ../tbb_2020.3/src/tbb/mac64-tbb-export.def -O2 -DUSE_PTHREAD -DDO_ITT_NOTIFY -stdlib=libc++ -m64 -mrtm -mmacosx-version-min=10.11 -fPIC -D__TBB_BUILD=1 -Wall -Wno-non-virtual-dtor -Wno-dangling-else -Wno-unknown-warning-option -Wno-deprecated-copy -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -I../tbb_2020.3/src -I../tbb_2020.3/src/rml/include -I../tbb_2020.3/include > tbb.def
clang++ -fPIC -o libtbb.dylib concurrent_hash_map.o concurrent_queue.o concurrent_vector.o dynamic_link.o itt_notify.o cache_aligned_allocator.o pipeline.o queuing_mutex.o queuing_rw_mutex.o reader_writer_lock.o spin_rw_mutex.o x86_rtm_rw_mutex.o spin_mutex.o critical_section.o mutex.o recursive_mutex.o condition_variable.o tbb_thread.o concurrent_monitor.o semaphore.o private_server.o rml_tbb.o tbb_misc.o tbb_misc_ex.o task.o task_group_context.o governor.o market.o arena.o scheduler.o observer_proxy.o tbb_statistics.o tbb_main.o concurrent_vector_v2.o concurrent_queue_v2.o spin_rw_mutex_v2.o task_v2.o -ldl -lpthread -dynamiclib -install_name @rpath/libtbb.dylib -stdlib=libc++ -m64 -mmacosx-version-min=10.11 -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-exported_symbols_list,tbb.def
--- CmdStan v2.31.0 built ---
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -MT stan/src/stan/model/model_header.hpp.gch -MT stan/src/stan/model/model_header.d -MM -E -MG -MP -MF stan/src/stan/model/model_header.d stan/src/stan/model/model_header.hpp
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -MT src/cmdstan/main.o -MM -E -MG -MP -MF src/cmdstan/main.d src/cmdstan/main.cpp
--- Translating Stan model to C++ code ---
bin/stanc --o=examples/bernoulli/bernoulli.hpp examples/bernoulli/bernoulli.stan
--- Compiling, linking C++ code ---
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -c -include-pch stan/src/stan/model/model_header.hpp.gch -x c++ -o examples/bernoulli/bernoulli.o examples/bernoulli/bernoulli.hpp
clang++ -std=c++1y -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I stan/lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DBOOST_DISABLE_ASSERTS -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" examples/bernoulli/bernoulli.o src/cmdstan/main.o -Wl,-L,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" -Wl,-rpath,"/Users/brianbeckage/.cmdstan/cmdstan-2.31.0/stan/lib/stan_math/lib/tbb" stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/tbb/libtbb.dylib stan/lib/stan_math/lib/tbb/libtbbmalloc.dylib stan/lib/stan_math/lib/tbb/libtbbmalloc_proxy.dylib -o examples/bernoulli/bernoulli
rm -f examples/bernoulli/bernoulli.o* Finished installing CmdStan to /Users/brianbeckage/.cmdstan/cmdstan-2.31.0
CmdStan path set to: /Users/brianbeckage/.cmdstan/cmdstan-2.31.0install.packages(c("coda","mvtnorm","devtools","loo","dagitty","shape"))also installing the dependencies ‘askpass’, ‘credentials’, ‘openssl’, ‘sys’, ‘zip’, ‘gitcreds’, ‘ini’, ‘systemfonts’, ‘textshaping’, ‘diffobj’, ‘rematch2’, ‘clipr’, ‘gert’, ‘gh’, ‘purrr’, ‘whisker’, ‘downlit’, ‘httr’, ‘ragg’, ‘xml2’, ‘xopen’, ‘brew’, ‘cpp11’, ‘brio’, ‘praise’, ‘waldo’, ‘usethis’, ‘pkgdown’, ‘pkgload’, ‘profvis’, ‘rcmdcheck’, ‘remotes’, ‘roxygen2’, ‘rversions’, ‘sessioninfo’, ‘testthat’, ‘urlchecker’
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/var/folders/98/_dskclzx4ysgs770t3f24qbw0000gn/T//Rtmpi3512p/downloaded_packagesdevtools::install_github("rmcelreath/rethinking")Registered S3 method overwritten by 'htmlwidgets':
method from
print.htmlwidget tools:rstudio
Downloading GitHub repo rmcelreath/rethinking@HEAD
Skipping 1 packages not available: cmdstanr── R CMD build ────────────────────────────────────────────────────────────────────────────────────
checking for file ‘/private/var/folders/98/_dskclzx4ysgs770t3f24qbw0000gn/T/Rtmpi3512p/remotes28174ba7190f/rmcelreath-rethinking-783d111/DESCRIPTION’ ...
✔ checking for file ‘/private/var/folders/98/_dskclzx4ysgs770t3f24qbw0000gn/T/Rtmpi3512p/remotes28174ba7190f/rmcelreath-rethinking-783d111/DESCRIPTION’
─ preparing ‘rethinking’:
✔ checking DESCRIPTION meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘rethinking_2.21.tar.gz’
* installing *source* package ‘rethinking’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rethinking)I can now load the rethinking library.
library(rethinking)This is an R Markdown Notebook. When you execute code within the notebook, the results appear beneath the code.
Try executing this chunk by clicking the Run button within the chunk or by placing your cursor inside it and pressing Cmd+Shift+Enter.
plot(cars)Add a new chunk by clicking the Insert Chunk button on the toolbar or by pressing Cmd+Option+I.
When you save the notebook, an HTML file containing the code and output will be saved alongside it (click the Preview button or press Cmd+Shift+K to preview the HTML file).
The preview shows you a rendered HTML copy of the contents of the editor. Consequently, unlike Knit, Preview does not run any R code chunks. Instead, the output of the chunk when it was last run in the editor is displayed.